#include <stdio.h>
#include <stdlib.h>
#include <limits.h>
#include <math.h>
#include <teem/air.h>
#include <teem/biff.h>
#include <teem/nrrd.h>
#include <teem/unrrdu.h>
#include <teem/gage.h>

Include dependency graph for bane.h:

This graph shows which files directly or indirectly include this file:

Data Structures
struct	baneRange
struct	baneInc_t
struct	baneClip
struct	baneMeasr_t
struct	baneAxis
struct	baneHVolParm
Defines
#define	BANE_EXPORT extern
#define	BANE baneBiffKey
#define	BANE_PARM_NUM 5
#define	BANE_GKMS_DECLARE(C) BANE_EXPORT unrrduCmd baneGkms_##C##Cmd;
#define	BANE_GKMS_LIST(C) &baneGkms_##C##Cmd,
#define	BANE_GKMS_MAP(F)
Typedefs
typedef struct baneInc_t	baneInc
typedef struct baneMeasr_t	baneMeasr
Enumerations
enum	{ baneRangeUnknown, baneRangePositive, baneRangeNegative, baneRangeZeroCentered, baneRangeAnywhere, baneRangeLast }
enum	{ baneIncUnknown, baneIncAbsolute, baneIncRangeRatio, baneIncPercentile, baneIncStdv, baneIncLast }
enum	{ baneClipUnknown, baneClipAbsolute, baneClipPeakRatio, baneClipPercentile, baneClipTopN, baneClipLast }
enum	{ baneMeasrUnknown, baneMeasrValuePositive, baneMeasrValueZeroCentered, baneMeasrValueAnywhere, baneMeasrGradMag, baneMeasrLaplacian, baneMeasr2ndDD, baneMeasrTotalCurv, baneMeasrFlowlineCurv, baneMeasrLast }
Functions
BANE_EXPORT baneRange *	baneRangeNew (int type)
BANE_EXPORT baneRange *	baneRangeCopy (baneRange *range)
BANE_EXPORT int	baneRangeAnswer (baneRange range, double ominP, double *omaxP, double imin, double imax)
BANE_EXPORT baneRange *	baneRangeNix (baneRange *range)
BANE_EXPORT baneInc *	baneIncNew (int type, baneRange range, double parm)
BANE_EXPORT void	baneIncProcess (baneInc *inc, int passIdx, double val)
BANE_EXPORT int	baneIncAnswer (baneInc inc, double minP, double *maxP)
BANE_EXPORT baneInc *	baneIncCopy (baneInc *inc)
BANE_EXPORT baneInc *	baneIncNix (baneInc *inc)
BANE_EXPORT baneClip *	baneClipNew (int type, double *parm)
BANE_EXPORT int	baneClipAnswer (int countP, baneClip clip, Nrrd *hvol)
BANE_EXPORT baneClip *	baneClipCopy (baneClip *clip)
BANE_EXPORT baneClip *	baneClipNix (baneClip *clip)
BANE_EXPORT baneMeasr *	baneMeasrNew (int type, double *parm)
BANE_EXPORT double	baneMeasrAnswer (baneMeasr measr, gageContext gctx)
BANE_EXPORT baneMeasr *	baneMeasrCopy (baneMeasr *measr)
BANE_EXPORT baneMeasr *	baneMeasrNix (baneMeasr *measr)
BANE_EXPORT baneHVolParm *	baneHVolParmNew ()
BANE_EXPORT void	baneHVolParmGKMSInit (baneHVolParm *hvp)
BANE_EXPORT void	baneHVolParmAxisSet (baneHVolParm hvp, unsigned int axisIdx, unsigned int res, baneMeasr measr, baneInc *inc)
BANE_EXPORT void	baneHVolParmClipSet (baneHVolParm hvp, baneClip clip)
BANE_EXPORT baneHVolParm *	baneHVolParmNix (baneHVolParm *hvp)
BANE_EXPORT int	baneInputCheck (Nrrd nin, baneHVolParm hvp)
BANE_EXPORT int	baneHVolCheck (Nrrd *hvol)
BANE_EXPORT int	baneInfoCheck (Nrrd *info2D, int wantDim)
BANE_EXPORT int	banePosCheck (Nrrd *pos, int wantDim)
BANE_EXPORT int	baneBcptsCheck (Nrrd *Bcpts)
BANE_EXPORT void	baneProbe (double val[3], Nrrd nin, baneHVolParm hvp, gageContext *ctx, unsigned int x, unsigned int y, unsigned int z)
BANE_EXPORT int	baneFindInclusion (double min[3], double max[3], Nrrd nin, baneHVolParm hvp, gageContext *ctx)
BANE_EXPORT int	baneMakeHVol (Nrrd hvol, Nrrd nin, baneHVolParm *hvp)
BANE_EXPORT Nrrd *	baneGKMSHVol (Nrrd *nin, float gradPerc, float hessPerc)
BANE_EXPORT int	baneOpacInfo (Nrrd info, Nrrd hvol, int dim, int measr)
BANE_EXPORT int	bane1DOpacInfoFrom2D (Nrrd info1D, Nrrd info2D)
BANE_EXPORT int	baneSigmaCalc (float sP, Nrrd info)
BANE_EXPORT int	banePosCalc (Nrrd pos, float sigma, float gthresh, Nrrd info)
BANE_EXPORT void	_baneOpacCalcA (unsigned int lutLen, float opacLut, unsigned int numCpts, float xo, float *pos)
BANE_EXPORT void	_baneOpacCalcB (unsigned int lutLen, float opacLut, unsigned int numCpts, float x, float o, float pos)
BANE_EXPORT int	baneOpacCalc (Nrrd opac, Nrrd Bcpts, Nrrd *pos)
BANE_EXPORT float *	_baneTRexRead (char *fname)
BANE_EXPORT void	_baneTRexDone ()
BANE_EXPORT int	baneRawScatterplots (Nrrd nvg, Nrrd nvh, Nrrd *hvol, int histEq)
BANE_EXPORT void	baneGkmsUsage (char me, hestParm hparm)
Variables
BANE_EXPORT const char *	baneBiffKey
BANE_EXPORT int	baneDefVerbose
BANE_EXPORT int	baneDefMakeMeasrVol
BANE_EXPORT double	baneDefIncLimit
BANE_EXPORT int	baneDefRenormalize
BANE_EXPORT int	baneDefPercHistBins
BANE_EXPORT int	baneStateHistEqBins
BANE_EXPORT int	baneStateHistEqSmart
BANE_EXPORT int	baneHack
BANE_EXPORT airEnum *	baneGkmsMeasr
BANE_EXPORT unrrduCmd *	baneGkmsCmdList []
BANE_EXPORT hestCB *	baneGkmsHestIncStrategy
BANE_EXPORT hestCB *	baneGkmsHestBEF
BANE_EXPORT hestCB *	baneGkmsHestGthresh

Define Documentation

#define BANE baneBiffKey

#define BANE_EXPORT extern

#define BANE_GKMS_DECLARE ( C ) BANE_EXPORT unrrduCmd baneGkms_##C##Cmd;

#define BANE_GKMS_LIST ( C ) &baneGkms_##C##Cmd,

#define BANE_GKMS_MAP ( F )

Value:

F(hvol) \
F(scat) \
F(info) \
F(pvg) \
F(opac) \
F(mite) \
F(txf)

#define BANE_PARM_NUM 5

Typedef Documentation

typedef struct baneInc_t baneInc

typedef struct baneMeasr_t baneMeasr

Enumeration Type Documentation

anonymous enum

Enumerator:

baneRangeUnknown
baneRangePositive
baneRangeNegative
baneRangeZeroCentered
baneRangeAnywhere
baneRangeLast

anonymous enum

Enumerator:

baneIncUnknown
baneIncAbsolute
baneIncRangeRatio
baneIncPercentile
baneIncStdv
baneIncLast

anonymous enum

Enumerator:

baneClipUnknown
baneClipAbsolute
baneClipPeakRatio
baneClipPercentile
baneClipTopN
baneClipLast

anonymous enum

Enumerator:

baneMeasrUnknown
baneMeasrValuePositive
baneMeasrValueZeroCentered
baneMeasrValueAnywhere
baneMeasrGradMag
baneMeasrLaplacian
baneMeasr2ndDD
baneMeasrTotalCurv
baneMeasrFlowlineCurv
baneMeasrLast

Function Documentation

BANE_EXPORT void _baneOpacCalcA	(	unsigned int	lutLen,
		float *	opacLut,
		unsigned int	numCpts,
		float *	xo,
		float *	pos
	)

BANE_EXPORT void _baneOpacCalcB	(	unsigned int	lutLen,
		float *	opacLut,
		unsigned int	numCpts,
		float *	x,
		float *	o,
		float *	pos
	)

BANE_EXPORT void _baneTRexDone ( )

BANE_EXPORT float* _baneTRexRead ( char * fname )

BANE_EXPORT int bane1DOpacInfoFrom2D	(	Nrrd *	info1D,
		Nrrd *	info2D
	)

BANE_EXPORT int baneBcptsCheck ( Nrrd * Bcpts )

BANE_EXPORT int baneClipAnswer	(	int *	countP,
		baneClip *	clip,
		Nrrd *	hvol
	)

BANE_EXPORT baneClip* baneClipCopy ( baneClip * clip )

BANE_EXPORT baneClip* baneClipNew	(	int	type,
		double *	parm
	)

BANE_EXPORT baneClip* baneClipNix ( baneClip * clip )

BANE_EXPORT int baneFindInclusion	(	double	min[3],
		double	max[3],
		Nrrd *	nin,
		baneHVolParm *	hvp,
		gageContext *	ctx
	)

BANE_EXPORT Nrrd* baneGKMSHVol	(	Nrrd *	nin,
		float	gradPerc,
		float	hessPerc
	)

BANE_EXPORT void baneGkmsUsage	(	char *	me,
		hestParm *	hparm
	)

BANE_EXPORT int baneHVolCheck ( Nrrd * hvol )

BANE_EXPORT void baneHVolParmAxisSet	(	baneHVolParm *	hvp,
		unsigned int	axisIdx,
		unsigned int	res,
		baneMeasr *	measr,
		baneInc *	inc
	)

BANE_EXPORT void baneHVolParmClipSet	(	baneHVolParm *	hvp,
		baneClip *	clip
	)

BANE_EXPORT void baneHVolParmGKMSInit ( baneHVolParm * hvp )

BANE_EXPORT baneHVolParm* baneHVolParmNew ( )

BANE_EXPORT baneHVolParm* baneHVolParmNix ( baneHVolParm * hvp )

BANE_EXPORT int baneIncAnswer	(	baneInc *	inc,
		double *	minP,
		double *	maxP
	)

BANE_EXPORT baneInc* baneIncCopy ( baneInc * inc )

BANE_EXPORT baneInc* baneIncNew	(	int	type,
		baneRange *	range,
		double *	parm
	)

BANE_EXPORT baneInc* baneIncNix ( baneInc * inc )

BANE_EXPORT void baneIncProcess	(	baneInc *	inc,
		int	passIdx,
		double	val
	)

BANE_EXPORT int baneInfoCheck	(	Nrrd *	info2D,
		int	wantDim
	)

BANE_EXPORT int baneInputCheck	(	Nrrd *	nin,
		baneHVolParm *	hvp
	)

BANE_EXPORT int baneMakeHVol	(	Nrrd *	hvol,
		Nrrd *	nin,
		baneHVolParm *	hvp
	)

BANE_EXPORT double baneMeasrAnswer	(	baneMeasr *	measr,
		gageContext *	gctx
	)

BANE_EXPORT baneMeasr* baneMeasrCopy ( baneMeasr * measr )

BANE_EXPORT baneMeasr* baneMeasrNew	(	int	type,
		double *	parm
	)

BANE_EXPORT baneMeasr* baneMeasrNix ( baneMeasr * measr )

BANE_EXPORT int baneOpacCalc	(	Nrrd *	opac,
		Nrrd *	Bcpts,
		Nrrd *	pos
	)

BANE_EXPORT int baneOpacInfo	(	Nrrd *	info,
		Nrrd *	hvol,
		int	dim,
		int	measr
	)

BANE_EXPORT int banePosCalc	(	Nrrd *	pos,
		float	sigma,
		float	gthresh,
		Nrrd *	info
	)

BANE_EXPORT int banePosCheck	(	Nrrd *	pos,
		int	wantDim
	)

BANE_EXPORT void baneProbe	(	double	val[3],
		Nrrd *	nin,
		baneHVolParm *	hvp,
		gageContext *	ctx,
		unsigned int	x,
		unsigned int	y,
		unsigned int	z
	)

BANE_EXPORT int baneRangeAnswer	(	baneRange *	range,
		double *	ominP,
		double *	omaxP,
		double	imin,
		double	imax
	)

BANE_EXPORT baneRange* baneRangeCopy ( baneRange * range )

BANE_EXPORT baneRange* baneRangeNew ( int type )

BANE_EXPORT baneRange* baneRangeNix ( baneRange * range )

BANE_EXPORT int baneRawScatterplots	(	Nrrd *	nvg,
		Nrrd *	nvh,
		Nrrd *	hvol,
		int	histEq
	)

BANE_EXPORT int baneSigmaCalc	(	float *	sP,
		Nrrd *	info
	)

Variable Documentation

BANE_EXPORT const char* baneBiffKey

BANE_EXPORT double baneDefIncLimit

BANE_EXPORT int baneDefMakeMeasrVol

BANE_EXPORT int baneDefPercHistBins

BANE_EXPORT int baneDefRenormalize

BANE_EXPORT int baneDefVerbose

BANE_EXPORT unrrduCmd* baneGkmsCmdList[]

BANE_EXPORT hestCB* baneGkmsHestBEF

BANE_EXPORT hestCB* baneGkmsHestGthresh

BANE_EXPORT hestCB* baneGkmsHestIncStrategy

BANE_EXPORT airEnum* baneGkmsMeasr

BANE_EXPORT int baneHack

BANE_EXPORT int baneStateHistEqBins

BANE_EXPORT int baneStateHistEqSmart

Data Structures

Defines

Typedefs

Enumerations

Functions

Variables

Define Documentation

Typedef Documentation

Enumeration Type Documentation

Function Documentation

Variable Documentation